BtaEX0016883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63823815-63827270:-
Coord C1 exon
chr19:63827090-63827270
Coord A exon
chr19:63825954-63826095
Coord C2 exon
chr19:63823815-63823933
Length
142 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTGTGCACGCAGCTC
3' ss Score
7.45
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
AGGGTATATTTCAGAAACCGCTGGGTGAAGACTGTCCACCCAGTTGTGCATCAGTACTGTTTGATCTCAAGCGCACATTCCACCTTTCAGATGCCACAGAAAGAAGATATTCTGAAACACCGAGTGGTGGTGGTTACATTGAACACTTCCCAGTACCTCTGTCAGCTGGACCTCGAACCTG
Seq A exon
CTCATAGCTGGCTGGTGAGGGCAGTTACAAAAGCAGAGTTTCAAAAATGTTTTGAACAGTGGCTGCATCCATTGGAATGAGTTATATTTCCTCTCAACTGACTTCTTTGATGGAACAACACTTATTTGCAATGTAAATTTTG
Seq C2 exon
GGTTTTTTACTCACATCTTGTTAGACGAGGCTGCCCAGGCCATGGAGTGTGAAACCATCATGCCTCTGGCACTAGCAACTAGACACACGCGGGTTGTCCTGGCTGGCGACCACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746-'45-45,'45-44,46-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(46.7=68.9)
A:
NO
C2:
PF130861=AAA_11=FE(43.3=100)
Main Inclusion Isoform:
ENSBTAT00000006233fB3209
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCACCCAGTTGTGCATC
R:
CCGCGTGTGTCTAGTTGCTAG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development