BtaEX0017169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001252 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr23:44170415-44196032:-
Coord C1 exon
chr23:44195975-44196032
Coord A exon
chr23:44185426-44185956
Coord C2 exon
chr23:44170415-44176359
Length
531 bp
Sequences
Splice sites
3' ss Seq
ACTCCTGTCTCACTATTCAGATG
3' ss Score
9.93
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
TTAGACAAAATTGAAGAAGCACAAAAAGAACTAAATGGGGCAGAAGTGTCAAAAAAAG
Seq A exon
ATGTGTTTTGTTGGGCTGTGCTATATGTACGAAGAATATCAATTTTTAAGGATGATGATTTAGAATTCTGCACTAACCACCAAGCTTGGGATACTGTAGTAGCTATTTCATTCAAGAAGAGATTTGGAAAAAGAAAATGAGACTCTGTGGGTGAGTGAGAAAAGGCCAGAAGAGGACTGAGCAAAACTTAAACGAGAGCAAACGTATATAGTACCATGTGCGCCTAGCTGGATGTTCAGTGAGTGAGGACGTGCTTTGGCAGATGGCGTTGGGAGCGCGGCTCTGCACCAGAACGCGGAGGCCCCTATGTGGGCTCCTTTCCGGAAGCCCACCACACAGCACCGAGTGACCCACTTAGTAACTGGTAACAGAACCCTTCCACGGCTACCTGTGTCTCTTCAGTGTGAAGACAGCTCCTAACAGCGGACGAGATCTCAGCCCGTTAAGCTCTTTGCCTCACCCCTGCCACACGGATGAGCCTCCGGTTCCCTTTTGCCCAAGATCATACACTGGCACCTCCTGCGGTTCCTG
Seq C2 exon
AACTCTTAGAGGCTGGCATCAAAGGAACTTCCGAATCGCTTAAAGGTGTGAAACGGAAAAAGATTGTAGCAGAGAATCACCTGAAAAAAATACCAAAATCCCCTCTGAGAAATCCTCTTCAGGCCAAACACAGACAAAATACCGAAGAGTCCCCCTTCCCCCTGCTCGCGGGCGCAGCGGAGCCCCACAAGAAGCAGAGCCACAGCCCGGCGAAGGCCGGGGGGAGGCCGCTGACCAAACACAACGGGGAGACCCCAGGGCTGACCGCCGGGGCCCCCAAGCCCGAAGCCCCTGTCTGCCCCCGCAAGCCCCCACTTCTGCTGCAGCCGTCGGAGCCACGCCGATGGCGGTCGGAGGGCCCCGACCTCGCCAAGGCCGGCGTCCCCGAGGGAAAGAGTGACCCTGGGTCCCCGCCCAGCAAGGGCAAAGCTGAGCACCGTGAGGCTCCGGCCTCCTCCGGCCACAGCTCCCCACCCTCCTCATTTGCAAACACCGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001252-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.799
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
Main Inclusion Isoform:
ENSBTAT00000001655fB3244
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAATGGGGCAGAAGTGTCA
R:
CAGCAGAAGTGGGGGCTTG
Band lengths:
352-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development