BtaEX0017182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9766238-9791973:-
Coord C1 exon
chr11:9791205-9791973
Coord A exon
chr11:9768398-9768583
Coord C2 exon
chr11:9766238-9766400
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTGTCTTGCTTACAGCTT
3' ss Score
9.26
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTCCGGCACAGGAGTCCCAGGCCGCCGCTAGCACCGCCGTGACACCTAGCCGAGAAGATCCGCGGGCGAGCGCAGCCCACGAATGAGGCCGAGAGGTCCGGTCGCCCTAGTGAAGCCGCACTTCGATTCTTTCTCAAGTTGAGCCTTAGTGATCTTGTGGCTGAAGTTAGTACTTTGACAGTGGGACATCCCAACACGTCGCCGGGAGTGACTCTTGGTCTCCGTTCAGCAGTTGGGACTATCAAAACCTGTTTTTAGAGACCCGAAACCCTCCAGCCGGGCGCGCCATCGTGTGCTTTCTTTGTGTGCCTCCCGGACTCACCAATCCCGGCCGGGCCGCCAAGTCCAGGTACAAAGCGGTCCGACCGCGCCGCTCTCCTACCCCGCACGCGCTCCGGCCTCGGTTTCCCAACTCTGTTCCGTCGGGAGTTGGCAGGATGATTGCCTCACATCTGCTCGCCTACTTCTTTACGGAGCTCAACCACGACCAAGTGCAGAAG
Seq A exon
CTTCTTTCAGCATTTTATCCAGTCTCTGATCTTTCAACTTGTGGTATTTTAGAAGAATGATGAAAGATGAGTAGTGATCAGGATGCTTGAAATGATCTGAGAAGGGCCAATCTCATAATTCCACAGGAGAGAGGGATGGACCCCAAACCCCACAGGGAGTTAGGATGTGGCTGCAAGAGAGAACCT
Seq C2 exon
GTTGACCAGTATCTCTACCACATGCGTCTTTCTGATGAAACTCTTCTGGAGATTGCTAAGCGTTTTCGCAAGGAGATGGAGAAAGGGCTTGGAGCCACCACTCACCCTACGGCTTCAGTAAAAATGCTGCCTACTTTTGTGAGGTCTACTCCAGACGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0034916=Hexokinase_1=PU(28.1=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTCCAGGTACAAAGCGG
R:
GCCCTTTCTCCATCTCCTTGC
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development