BtaEX0017354 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003278 | HOXC10
Description
homeobox C10 [Source:HGNC Symbol;Acc:HGNC:5122]
Coordinates
chr5:26202176-26205995:-
Coord C1 exon
chr5:26205429-26205995
Coord A exon
chr5:26203103-26203195
Coord C2 exon
chr5:26202176-26202477
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCCTTGACCTTAGGTC
3' ss Score
10.57
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
CGCCTACCGCCTGGAACAACCTGTTGGCAGGCCGCTGTCCTCCTGTTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGCGCAGAGAAGCGGGCGAAAAGTGGCCCCGAGGCAGCTCTCTACTCCCACCCTCTGCAGGAGTCCTGCCTCGGGGAGCACGAGGTGCCCGTGCCCAGCTACTATCGCGCCAGCCCGAGCTACTCCGCGCTGGACAAGCCGCCCCACTGTGCCGGGGCCAACGACTTCGAAGCCCCTTTCGAGCAGCGGGCCAGTCTCAACCCGCGCGCCGAACATCTGGAGTCTCCCCAGCTCGGGGGTAAAGTGAGTTTCCCTGAGACCCCCAAGTCCGACAGCCAGACCCCCAGTCCCAATGAGATCAAGACCGAGCAGAACCTGGCAGGCCCCAAAGGCAGCCCCTTGGAGAGCGAAAAGGATCGGGCCAAAACCGCCGACTCCAGCCCAGACACCTCCGACAACGAAGCAAAAG
Seq A exon
GTCTCTGGCCAGGGCAGTTGTCTGAGGACCCCTCAGCATGCCCCAGAGCTGTTGCCCCTGACCTCTGCTGCCTGCACAAGCTCCCTGCCTCAG
Seq C2 exon
AGGAGATAAAGGCAGAAAACACCACAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAAGAAGAGGTGCCCCTATACTAAACACCAGACGCTGGAATTGGAGAAAGAATTTCTGTTCAATATGTATTTGACGCGAGAGCGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGACAGACAAGTCAAAATCTGGTTTCAAAATCGCAGAATGAAACTCAAGAAAATGAACCGAGAGAATCGGATCCGGGAACTGACCTCCAATTTTAATTTCACCTGAGCTCGGGGGGCCTCCCCTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003278-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=0.406 C2=0.299
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=61.3)
Main Inclusion Isoform:
ENSBTAT00000004243fB3291
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCGACAACGAAGCAAAA
R:
GTCTTGCTAATCTCCAGGCGG
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development