BtaEX0017357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016030 | HOXD10
Description
Bos taurus homeobox D10 (HOXD10), mRNA. [Source:RefSeq mRNA;Acc:NM_001099105]
Coordinates
chr2:20828934-20832040:-
Coord C1 exon
chr2:20831257-20832040
Coord A exon
chr2:20830038-20830168
Coord C2 exon
chr2:20828934-20829900
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTACTAATATTTTGTGCAGGTC
3' ss Score
6.53
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGACCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAAGTCCCCACTTGCTCCTTCACCACCAACATTAAGGAAGAATCCAATTGCTGCATGTATTCTGATAAACGCAACAAACTCATTTCTGCTGAGGTCCCATCGTACCAGAGGCTGGTCCCTGAGTCCTGTCCCGTTGAGAACCCCGAGGTTCCTGTCCCTGGATATTTTAGACTGAGTCAGACCTACGCCACCGGGAAAACCCAAGAGTACAATAACAGCCCCGAAGGCAGCTCCACAGTCATGCTCCAGCTCAACCCTCGCGGCGCGGCCAAGCCGCAGCTCTCGGCCGCCCAGCTGCAGATGGAAAAGAAGATGAACGAGCCAGCGAGTGGCCAGGAGCCCACCAAAGTCTCCCAGGTGGAGAGCCCCGAAGCCAAGAGCGGCCTTCCGGAAGAGAGGAGCTGCCTGGCAGAGGTCTCCGTGTCCAGTCCCGAAGTACAGGAGAAGGAAAGCAAAG
Seq A exon
GTCAGAAAGTAGAGAGAGAGAGAGAGAGAGAACGCTGACACAGACGGCAAGAATACCCACCCATTTGTGTCATTTTGGGTACTTTAACTAACCTGGCATCATTTACAAATATCTTTCAGGGCCCACCTCAT
Seq C2 exon
AGGAAATCAAGTCTGATACTCCAACCAGCAATTGGCTCACTGCAAAGAGTGGCAGAAAGAAGAGGTGCCCTTACACTAAGCACCAAACGCTGGAATTAGAAAAAGAGTTCTTGTTCAATATGTACCTCACCCGCGAGCGCCGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGCAGGTCAAGATTTGGTTTCAAAACCGCCGAATGAAACTCAAGAAGATGAGCCGAGAGAACCGGATCCGAGAACTGACCGCCAACCTCACCTTCTCTTAGGTCCGAGGCCCGTCAGAGGCTAGGATCGGAGAGGGGCGTCGAGTTCCAGGGCCGAGTGCTGGAGGACTGGGAAGGCGGAAACAAAACCTTCAATGCTCTTTGTTTTTTGAATTTTTTTTTTTTCCTGCTAGAATGTGACTTTGGGGTCATTCTGTTCGTGCTGCAAGTGATCTGTAATCCCTATGAGTATATATATATATATATATATTAAAAAAACTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016030-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.518 A=1.000 C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=61.3)
Main Inclusion Isoform:
ENSBTAT00000021334fB3293
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGATGAACGAGCCAGCG
R:
CCAGCGTTTGGTGCTTAGTGT
Band lengths:
244-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development