BtaEX0017452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6642003-6645921:-
Coord C1 exon
chr3:6645727-6645921
Coord A exon
chr3:6643460-6643963
Coord C2 exon
chr3:6642003-6642107
Length
504 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGATTGGTTTGTAGCTC
3' ss Score
6.78
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATTCAGGAACTAGAATCTCTCCTGTGTCACAGTGAGAGTCCATCTCAGCTCATTTGGACATCATCTCGCAATGCAAAGAAATCTAATTTCAGCTTTGAGGATGTCCAGCACAGCAAAGGCCAGGAGCCCTACAGCTCTTCCAAATACGCGATTGACCTTCTGAGTGTGGCTTTGAACAGACACTTCAACCATCAG
Seq A exon
CTCATGATCGTTCTACCTTGGCTTTTATGAAGAAAGAAGTAGCTAAGAAAGAACTACCTCCCTTTGAAGACTTGTATGACTGGAAATGTTGGATCCCTACAGGCTGCCTGGGAGAAGGCAATGGCGCCCCACTCCAGTACTTTTGCCTAGAAAATCCCATGGACGCAGGAGCCTGGTAGGCTGCGGTCCATGGGGTCGCGAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGTACGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACGACTGAAGCGACTCAGCATCAGCAGCATAGGCTGCCTGATAGACTTTACCTGTCCATGAATGACTCCTCCTGTCACACAGCCTTGAGAAATACTCAGGGTCGTCACGCTCATTCCTTCAGATGAAATGTGTGAAGGGACTTCAGTTTAG
Seq C2 exon
GGTCTGTATTCCAGTGTAGTGTGCCCAGGTACGATGCTGACCAATTTGACATATGGAATTCTACCTCCCTTTGTGTGGATGTTAATCATGCCAATCATATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(54.9=95.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000007841fB3311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAACTAGAATCTCTCCTGTGT
R:
CCATATGATTGGCATGATTAACATCC
Band lengths:
295-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development