BtaEX0018556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018993 | ITGB7
Description
Bos taurus integrin, beta 7 (ITGB7), mRNA. [Source:RefSeq mRNA;Acc:NM_001105365]
Coordinates
chr5:26958461-26964606:+
Coord C1 exon
chr5:26958461-26958479
Coord A exon
chr5:26958861-26958984
Coord C2 exon
chr5:26964403-26964606
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTGTGCTCCCCTCAGGCC
3' ss Score
9.25
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CGCACGCAAGCACGCACCT
Seq A exon
GCCTCCTCCCCTTGGGCAGATCCCACACTCCTTGGAGACAGTGGCTCAGTGGCTCAGTTCTGTCTCCTCCTCGTGACGCTAAGTGGGCAGCAGAGGTTCCTCCTGACTTGGGAATTCTGGATGG
Seq C2 exon
ACCATGGTGGCTTTGTCAATGGTCCTTGTTTTCCTGCTGGCCCTGAGCAGAGGTGAAAGTGAGTTGGACGCCAAGAGCTCATCCCCACAGGAGGCCACAGAGTGGAGGGATCCCAATCTGTCCCTGCCAGGGTCCTGCCAGCCAGCTCCCTCCTGCCAAAAGTGCATCCTCTCACACCCGAGCTGTGCATGGTGCAAGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018993_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.299
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0036213=Integrin_beta=PU(4.0=25.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development