BtaEX0018654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021687 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr7:47681734-47683347:+
Coord C1 exon
chr7:47681734-47681945
Coord A exon
chr7:47682164-47682371
Coord C2 exon
chr7:47683180-47683347
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCCTTTGCCGCCAGCCT
3' ss Score
6.28
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGAAGCCGGAGCTGGACGAACTGACGCTCGAGCGTGTGCTGGAGGAGCTGGAGACGCTGTGCCACCAGAACATGGCGCGGGCCATCGAGACGCAGGAGGGGCTGGGCATTGAGTACGACGAGGATGTCGTCTGTGACGTGTGCCGCTCTCCCGAGGGCGAAGATGGCAATGAGATGGTCTTCTGCGACAAATGCAACGTCTGCGTGCACCAG
Seq A exon
CCTCCCTCAGACTCTGCCCACGGACCGTCCTACCCCGTCCTCCTCTGCTCCTCAACTTACAACGAGGCAGCACAGTGTAGTGATGGAGAGCACAGCCTGGAGCCAGGCCACCTGGTTTCAAATCATGGCTCTGCCCTTTGCAAGCTGTGTGATCTGGGGTCGGTTTCTTGACCTCTCTGAGCTGCTGTTTCCTCAAGTATAAATAAAA
Seq C2 exon
GCATGCTATGGGATCCTCAAGGTGCCCACGGGCAGCTGGCTGTGCCGGACATGTGCTCTGGGTGTCCAGCCGAAGTGCCTGCTCTGCCCGAAGCGAGGAGGAGCCTTGAAGCCCACTAGAAGTGGGACCAAGTGGGTGCACGTCAGCTGTGCCCTGTGGATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021687_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(13.7=26.8),PF0013017=C1_1=PU(72.9=49.3),PF138311=PHD_2=PU(42.9=21.1)
A:
PF0013017=C1_1=PD(0.1=0.0),PF0062824=PHD=PD(9.4=5.3)
C2:
PF0013017=C1_1=PD(22.9=19.6),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Inclusion Isoform:
ENSBTAT00000028903fB3523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAACTGACGCTCGAGC
R:
TTCAAGGCTCCTCCTCGCTTC
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development