BtaEX0018841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020061 | KCNJ12
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 12 (KCNJ12), mRNA. [Source:RefSeq mRNA;Acc:NM_001024690]
Coordinates
chr19:35955796-35983209:+
Coord C1 exon
chr19:35955796-35955865
Coord A exon
chr19:35976344-35976429
Coord C2 exon
chr19:35983091-35983209
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTTTTGAACCAAGGCG
3' ss Score
3.43
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCGGGGCCAGGAACAGCCGCCCGGAGCTCGGAGGACGCGGAGCGCGCAGTGTCCAGGGCACTGACCGAG
Seq A exon
GCGCCCCAGCTTAGCCAGCTCCTGCCCCATTACCAGGGTGACCAGGACAGCCATATCCTTCACCCCACAGCTGCACCCAGGGTCAG
Seq C2 exon
GGTCTTCCAGCCGCTGAGGCCTCTCCAGCCGGTGGGGCAATGGCAGCCACAGCTAATGCAGCCTTGAAGACGGTCACTTGCTTGGTGAGCACCGTTACTTAGAAGATAGGGCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020061_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTCCAGGGCACTG
R:
CTCTGGAGCCCTATCTTCTAAGT
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development