BtaEX0018891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103399618-103405116:+
Coord C1 exon
chr11:103399618-103399717
Coord A exon
chr11:103401109-103401149
Coord C2 exon
chr11:103405060-103405116
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCACCTTCTCCCACCTCCAGAGA
3' ss Score
10.27
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCTGCGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTGACCTGCCTGCTGTACATTGTCCGCGTCCTGCTGGACGACCCAGCCCTGGGGATCGGATG
Seq A exon
AGACATCGAGGCACCTGGCTTTACATCCCCAGGGAGACCAG
Seq C2 exon
CTGGGGCTGCCCGAAGCAGAATTACACCTTCAATGAGTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGTTCAACTTCTCCCTG
R:
GAGGACGACTCATTGAAGGTGT
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development