BtaEX0018969 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45734020-45782859:+
Coord C1 exon
chr29:45734020-45734394
Coord A exon
chr29:45739532-45739653
Coord C2 exon
chr29:45782721-45782859
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTTTAAATTTTAGGTT
3' ss Score
12.55
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAAGTGGTGTAGCCCGACTGTAAGGAACTGAAACCATCTTTTGCCTATAGGCCTCAGACAGTTGTAATGTGATTGTTGATCTTGGTTTGGCACAACTTGCCCCAAAGCTGAGAGTTCCCAAACTGATGAAGAGGAACCCGGTTTCTTAGGAAAACTTTTAACTTACACATATCCTAAATACTTCATTCCAAGGAAAAAAAGCTTGAGTTCGAGGATGAGTTCTCATCTCTGCTCCTATCATTATTCTTTAGTGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTCTGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTG
Seq A exon
GTTCTTGGGGGTTTTCTCTATCTGTGAGTACTTGGTAAAAACTTAAAGCATAAAGATAAAAGGCAGCAGATAGTGACCAAACCAGTGGTTTTGACAGATACAGTGGTGAAGGCCTCCTTCAG
Seq C2 exon
CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAGCTCCACACCAACAAATATAATGCAAATTTTGTTACTTTTATGGAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.170
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCTCATCTCTGCTCCT
R:
TGGTGTGGAGCTTCTCTTCCA
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development