BtaEX0018970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45793389-45794798:+
Coord C1 exon
chr29:45793389-45793482
Coord A exon
chr29:45794393-45794470
Coord C2 exon
chr29:45794645-45794798
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATGCCCTCCTTCTCTCCAAGTCC
3' ss Score
5.79
5' ss Seq
AAGGTCTAC
5' ss Score
0.68
Exon sequences
Seq C1 exon
GTACTGTCTGATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGACTTCGGTGGTACCTCGGTTTGGTATCATATCCATCAAGGGGGAAAG
Seq A exon
TCCTGTATAGGTTCCGGGTTCTACAATCAAACCCCAGGGAAGCCCTAATGCTGTTTGATCAAGTGGAGGACAGAAAAG
Seq C2 exon
GTCTTCTGGCTCATCCCCCCTACAGCCCACAACCTGGAGCTGTACGAGAATTGGCTGCTGTCAGGGAAACAGGGAGACATCTTTCTGGGTGACCGGGTATCAGATTGCCAACGCATTGAGCTCAAGCAGGGCTATACCTTCGTCATTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF0237317=JmjC=PU(29.7=93.8)
A:
NO
C2:
PF0237317=JmjC=FE(50.5=100)
Main Inclusion Isoform:
ENSBTAT00000061554fB3583
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCATGTGGACTTCGGTGG
R:
GGCAATCTGATACCCGGTCAC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development