BtaEX0019302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20967784-20971982:+
Coord C1 exon
chr2:20967784-20967842
Coord A exon
chr2:20970884-20970922
Coord C2 exon
chr2:20971937-20971982
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATATTTGAATTGATATTTAGATG
3' ss Score
4.37
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CATCTGGAGCATAAGAACAGTGCTTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
Seq A exon
ATGTTTGCTACTCCAAAACTTCAATGAAGAGATAATTTT
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAAATAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061_MULTIEX2-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000024045fB3647
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGAGCATAAGAACAGTGCT
R:
TCTGGGATTTTAAATCATCCAATGCT
Band lengths:
89-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development