BtaEX0019503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021336 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
Coordinates
chr5:56234814-56237820:-
Coord C1 exon
chr5:56237716-56237820
Coord A exon
chr5:56237154-56237174
Coord C2 exon
chr5:56234814-56235030
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTGCTGCTGCGGTTCCTTAGGTG
3' ss Score
8.81
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGTGCAGAAATGGAGCCCGAGGACAGTGGGGGGATTCACTCCCAAAAGCAGAAGATTTCCTTTCTTGAGAACAACCTGGAACAGCTTACAAAGGTTCACAAACAG
Seq A exon
GTGGAAGACTGGGTTTCAAAG
Seq C2 exon
CTGGTACGTGACAATGCAGATCTGCGTTGTGAGCTTCCTAAACTGGAAAAACGACTTAGGGCTACGGCTGAGAGAGTTAAGGCCCTGGAGGGTGCACTGAAGGAGGCCAAGGAGGGTGCCATGAAGGACAAGCGTCGGTACCAGCAGGAGGTGGACCGCATCAAGGAGGCCGTGCGTTACAAGAGCTCTGGCAAGCGGGGCCATTCTGCCCAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021336_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.557 A=0.000 C2=0.589
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(30.4=100),PF041569=IncA=FE(29.3=100),PF061568=DUF972=PU(24.7=62.9)
A:
PF115593=ADIP=FE(5.4=100),PF041569=IncA=FE(5.2=100),PF061568=DUF972=FE(6.7=100)
C2:
PF115593=ADIP=PD(52.7=80.8),PF041569=IncA=PD(56.0=89.0),PF061568=DUF972=PD(65.2=79.5)
Main Inclusion Isoform:
ENSBTAT00000028441fB3684
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGAACAACCTGGAACAGCT
R:
TCTCAGCCGTAGCCCTAAGTC
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development