BtaEX0019508 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018125 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:47388448-47391264:-
Coord C1 exon
chr2:47391140-47391264
Coord A exon
chr2:47390191-47390955
Coord C2 exon
chr2:47388448-47388552
Length
765 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTGGTCCTGAAGTTC
3' ss Score
4.55
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
ACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATTAATATTAAGCAAGAAAATGTAGAGACTGAAAAAAAACTCAGTGGGAAGCTGTATCTAGTTGATTTGGCTGGGAGTGAAAAG
Seq A exon
TTCCCTATTCACGTCACAGGAGGTGCTTTGAATGCAAACCCTGATTTATGCCTAATAGAGTCTGATGATGACATGAGGCGAGTGTTTGGTGTAAACTTAGCTTGGTGAAGGCAGCTGTTCAAAGGTAGGAGGGACGTGAACTTCTGAGGGCAAGAAAAATCTCTGTGTTGTAACAGATTCGAATAGGCCAGGAAGGGGCTTTGCCATTGGAATGTGGCAGGCTTGCCTCTGCAGGTTTGTTTGCTGATAAAAGATCTGGAGCGTGGGGCTCTCCCTGCCTTCCTGGCTTCTCTCTCCAGCAGGTGTGAACTGCCCCAGTCCTGCATGGGCAGCCTCACTCCCTTCAGGCTACAGGGCCTGAAGCCCGTGTTTAGCCACAAGCCCTGACCTTTCTGTGATTTTGTCAGGATTTTCTTTCGGCATCTGGACCCTGTCAGTTCTCTTCCAGGCATACTCGGCCATACTCCAGATCCAATAGGCTTCCCAGCACCTGCCCCCTGCCCTCCCACCTCACCTCCCCAGCACCGCTAGAAGCTCCTGTGGCCACACCCGAGCTGGGGGCACTGCCCGCCTTGGGTGACATCATAGAGCAAGTCTCTGCACACAATACCCTGTGGCCTACCTCATCGCTGATGTCATGCAGACTGTGTCCCCATCAGGGCCAGCCCTGAAGCTCGGTCAGTCTCCCGAACTGTGTCACTGATCCCCACTTACTGCTCCCACCACTGAGTTACCGAACACCAAGTTATGGCCACTGTCATCCGT
Seq C2 exon
GTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAACGTGATCGCTGCTTTGGCAGAAGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018125-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(17.4=100),PF142841=PcfJ=PD(41.2=95.2)
A:
PF0022518=Kinesin=PD(3.8=25.0)
C2:
PF0022518=Kinesin=FE(10.8=100)
Main Inclusion Isoform:
ENSBTAT00000024127fB3686
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAATGAACACAGCTCTAGA
R:
CGTCCCTTCTGCCAAAGC
Band lengths:
230-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development