BtaEX0019694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046980 | KLRF2
Description
killer cell lectin-like receptor subfamily F, member 2 [Source:HGNC Symbol;Acc:HGNC:37646]
Coordinates
chr5:100492586-100499237:-
Coord C1 exon
chr5:100499139-100499237
Coord A exon
chr5:100497217-100497264
Coord C2 exon
chr5:100492586-100492734
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTGCATTGAATGCAGATA
3' ss Score
6.23
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTTCGCCCTGTATCTACAGTGTTACTGTCTCATGCTAGTACTTGGATGCATTGGCATCCTTATTTTCATGATGGCAGTAATTGGCCTGAACTTTTGGA
Seq A exon
ATAGAGAAATGGATTTCCTTCAGAAAGCTAATATCACCAGCCTCGCAG
Seq C2 exon
GAAATAATTATGTGTGCCCAAGTGACTGGCTACTAAATCAAGGAAAATGTTACAGGTTTTCAACTTTTTCTAAAACTTGGAATGAAAGTCAACGTGATTGTTTAAAGCTACAGGCACATTTACCTGTGATTCAAAATTCAAAAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046980-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.5=54.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTAATTGGCCTGAACTT
R:
TGCCTGTAGCTTTAAACAATCACG
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development