BtaEX0019879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33279352-33284053:-
Coord C1 exon
chr24:33283883-33284053
Coord A exon
chr24:33279673-33280131
Coord C2 exon
chr24:33279352-33279443
Length
459 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTTTCGGTGGTGAAGCAT
3' ss Score
0.84
5' ss Seq
GGGGTATTT
5' ss Score
3.64
Exon sequences
Seq C1 exon
GTTGTGGTGTCCCTGATAAATGGTCGACCAGGTGCAAAAAACTTTACTTTCTCCCACGCCCTGAGGGAATTCACCAAGGCCACAAACATCCGCCTGCGTTTTCTCCGAACCAACACCCTTCTTGGACACCTCATCTCCAAAGCGCAGAGAGATCCAACCGTCACCCGGCGG
Seq A exon
CATGTGGAATCTTAGCTCCCCAATCAGGGATCAAACCTGTGCCCCCTGCATTGGAAGGTGACGACTTAACCACTGGACCACCAGGGAAGTCCCAATTATTTTTTTAATAATGTAACAAGTTTTGATCATTAGTCACGACAACTATACCATTTTTTTTCATTTAATTTTTTTGTCTTTTGACCATGTGGCACGTGGGATCTTAGTTCCCCAACCTGGGATTGAACCCACGTCCCCTGCATTGGAAGGCGGAGTCTGAACCACTGGACTGCCAGGGAAGTCCCAATTACTTTTTATAATGTAACAAGTATAGCTCATTAGTCATGACAGCTGTACCATTTTATTTATCTATTTTTATTTGTCTTTTGACCACATGGCATGTGAGATCTTAGTTCCACGACCAGGGATTGAACCCACGTCCCCTGATTGGCTGCACGGAGTCTTAAGCACTGGACCGCCGGG
Seq C2 exon
TATTATTACAGCATAAAGGATATCAGCATCGGTGGGCGGTGTGTTTGCAACGGCCATGCTGAAGTGTGCAATGCAAACAATCCGGAAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(28.0=100)
A:
PF0005512=Laminin_N=PD(1.0=40.0)
C2:
PF0005512=Laminin_N=PD(5.5=35.5)
Main Inclusion Isoform:
ENSBTAT00000060991fB3767
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGGTGTCCCTGATAAATGGT
R:
GTTTTTCCGGATTGTTTGCATTGC
Band lengths:
262-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development