BtaEX0020561 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98016612-98078725:+
Coord C1 exon
chr5:98016612-98017024
Coord A exon
chr5:98069481-98069588
Coord C2 exon
chr5:98078528-98078725
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTTTGTGTTTTCAGTGT
3' ss Score
8.3
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
TTTTCTCTTTTCGTTCTAGCGGCCCCTTTGTTGCTTTATGCAAACAGACGGGACTTGCGATTGGTTGATGCTGCAAATGGCAAAGAGAATGCTACGATCGTAGTTGGAGGCTTGGAGGATGCAGCTGCGTTGGACTTTGTGTTTAGTCATGGCTTGATATACTGGAGTGATGTCAGCGAAGAGGCCATTAAACGAATAGAGTTCAACAAAACTGAGAGTGTACAGAATGTTGTTGTTTCTGGATTATTGTCCCCTGATGGGCTGGCATGTGATTGGCTTGGAGAAAAATTGTACTGGACAGATTCTGAAACTAATCGTATTGAAGTTTCTAATTTAGATGGATCTTTACGAAAAGTTTTATTTTGGCAAGAGTTGGATCAACCTAGAGCAATTGCCTTAGATCCTTCAAGTGG
Seq A exon
TGTTGTGAATTATCTGAGAGAGTTCCTTCAGTGTGAAGTTATTTTTGGTGGCATCACTCTGGGATGTGTTTATCCTTTTGGGCACAACCACTTTGCTCATTTATGTTG
Seq C2 exon
GTTCATGTACTGGACAGACTGGGGAGAAGTACCAAAGATAGAACGTGCTGGAATGGATGGTTCTGATCGTTTCGTCATAATAAACACTGAAATTTACTGGCCAAATGGACTGACTTTGGATTATGAGGAACGGAAGCTTTATTGGGCAGATGCAAAACTTAATTTCATTCACCGATCAAATCTGGATGGAACAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=WD(100=29.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=62.7),PF0005812=Ldl_recept_b=PU(50.0=32.8)
Main Inclusion Isoform:
ENSBTAT00000061164fB3910
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGGATTATTGTCCCCTGA
R:
GAACCATCCATTCCAGCACGT
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development