BtaEX0021550 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47832647-47847256:-
Coord C1 exon
chr2:47845124-47847256
Coord A exon
chr2:47838531-47838659
Coord C2 exon
chr2:47832647-47832973
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCATTTCAACAGCTT
3' ss Score
9.96
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TGCAGTTCCTAAACCTGGACCCGACTTGCTAAGGAAGCAGGGTCAGGGGTCGTTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCGGGTTGTGGGGGCTCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTACAGATCCCAGTATGAACTCCAGTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCATGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAATAGTCCAGTCCCAAACCACCATCTTACAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAATTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAG
Seq A exon
CTTTTAGAGTAATCCTATGTGTTAATAGAGGAACCAGAAATGATCAGTAATAAAACACACAATTTTGTCTGACCCCATAAGAATGGCCTCCTTGATCCAGTCATCATCACTCTGACCTCATACTCCAAG
Seq C2 exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.062 C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061479fB4125
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCAGGCTAGCGGGAACT
R:
TGACGCCGTCTTGAAGAACAG
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development