BtaEX0021551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47852895-47858327:-
Coord C1 exon
chr2:47857928-47858327
Coord A exon
chr2:47857524-47857667
Coord C2 exon
chr2:47852895-47852997
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGCTTATCTCTCTAACAAGGAT
3' ss Score
7.19
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
TGAATATGATTTTCGTTAGTCAGAAGCACTTGTTTTTACCCATGTAGACCATCCTTAGGAATTAAATATTGGTTATTTAATGTAGATTATAATGGGAAACTGATTTTTTCTACAATGGCAGATTTCAAGGACTTGGTTCCAAACTGAGCCGAAGCTTCCCAATGCATTTTGTACAGTCTGGGGAAAACTGTGCTGCATTGGCCATTTTTGAAGGCCACGATGCCCTGTAATACAAGGACATCATCTTATTGCTGATATCTTTGGGGAGTCCTAAGCAGACACAGAAAATGAATGGAGGCAAGGAGTGTGACGGAGGGGACAAGGATGGAGGTCTTCCAGCTATACAAGTTCCTGTGGGTTGGCAGCGTCGTGTGGATCAAAATGGAGTGCTTTACATCAG
Seq A exon
GATAAAGAAAAAGATGAAGATTTCTAAAAGAAACCCATGAGCGTCATTACCACATTCGCAGGAGAATGTAAAATACTGAAAATAGACCCGATGTCTCCTGACAATATTATTGTCCTTCATAGTGCTTCCGCTGGCTACTCTGAT
Seq C2 exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGAGCAGGTTAAAACATACCTGCTTACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061479fB4126
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACGATGCCCTGTAATAC
R:
TGCATGTTCCGTCAGTAAGCA
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development