BtaEX0021567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116277144-116394390:-
Coord C1 exon
chr1:116394211-116394390
Coord A exon
chr1:116351980-116352545
Coord C2 exon
chr1:116277144-116277314
Length
566 bp
Sequences
Splice sites
3' ss Seq
TTCCTTACTTTTCTTTCTAGAAC
3' ss Score
10.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTAAACATGGCTGTTAGTGTCACTCCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAAAGGGGGACTTGCTCACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCATTGAAA
Seq A exon
AACTAGAGCTCCATCTCCCCCCTCAGCTGTGTTTTTGGCTGTATGTGGGATGCTAGAATGGCCTATCTTCGTGTATTTCGTTGCACTTTGCCATCGCTTCTTATGTTCTGTTGGTGAATTTTGGTGATTCTTTTCAAGCGCTTCTTGAGCTCTGTGCTAGTTGTTCCCATTCCCTTGTCCCCTTAGGGTCTTGTGCTGTGTGGTCATGTCTCCACTTCCTTGGCCCTGTCCACTGACAGACCCTTGGGTTCCCCGATGGCTGCCTCTGAACCCCTGTGAGGGCGGGAATATTCCTCCCCCTGCTGCTACAATTGAGCGCCCTGTGCTGGGTACCACGTTGCCCTCTACACCCGCTTTCAGTTGTTAAGGCTTCCCAAGCTTTGGCTGCGGCTCAGTGATCCTGCTGTCCAAACCCTCAAGCTTTCCTAGCCTCGACACTCAGTGGTAGCAGCAGGTGTTGGGATCTCTCCAAGCCCCTAAGACCCTGGGAGCAAGAGAATGGCCGTTTGACATAGACCTCAGGAGTTTACAAAGCACCAAGAAACCTCTGCAGAAGATGTGTAAAG
Seq C2 exon
GGTCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTGGAGATAAATGGGCGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564_MULTIEX1-4/13=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.121 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000005998fB4131
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGCTGTTAGTGTCACTCC
R:
CACGGGTTGTAATGGGGCAC
Band lengths:
347-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development