BtaEX0021576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:16123579-16141559:-
Coord C1 exon
chrX:16141395-16141559
Coord A exon
chrX:16124171-16124304
Coord C2 exon
chrX:16123579-16123773
Length
134 bp
Sequences
Splice sites
3' ss Seq
GAAGTTGTGAAAGCTCTCACCTT
3' ss Score
-13.77
5' ss Seq
GTACTGCCA
5' ss Score
-23.26
Exon sequences
Seq C1 exon
GGCCGGTGTGCCAGAGAGAACTGCAAGTACCTTCACCCTCCTCCACATTTGAAGACGCAGCTGGAAATTAATGGACGGAACAATCTGATTCAACAAAAGAGTGCCGCCGCCATGTTCGCCCAGCACATGCAGTTTATGTTCCAAAATGCTCAGATGCCATCAGTT
Seq A exon
CTTTTAAAATCCACTCCTTTCTTCCTCCCTCTTTGCCTGTCTTCATAATTGATAGTGGGCTGGGAAGAAAAGCAAGTGTTCGGTAGGGCAGGTGGGAACCATGGTGGGACCAGAAGCTTTGGAGCAAAGCAGTA
Seq C2 exon
AATTCTTTTCCTGTGAATCCTGCAATTGCAGCTAATCCTGCCATGGCTTACAATCCTTACTTACCTCATCATCCTGGGATGGGCCTGGTCCCCGCCGAACTGGTACAAAACGCACCTGTTCTGATTTCTGGAAACCCACCTCTGCCACTGCCAGGGCCTGTTGGTCCAAAACCGATACGTTCAGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.436 A=1.000 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.6)
Main Inclusion Isoform:
ENSBTAT00000018746fB4137
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTTCACCCTCCTCCACA
R:
GTGCGTTTTGTACCAGTTCGG
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development