BtaEX0021701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4318362-4335698:+
Coord C1 exon
chr27:4318362-4318480
Coord A exon
chr27:4333385-4333439
Coord C2 exon
chr27:4335611-4335698
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTCTCAATCACTAGGTG
3' ss Score
9.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTTCAAAAACTTTTAACAAACAAGTAACTCATGTCGTGTTCAAAGACGGGTACCAGAGCACCTGGGAAAAAGCACAGAAGAGAGGCGTGAAGCTCGTCTCAGTGCTCTGGGTTGACAA
Seq A exon
GTGGGGAGTTGGTGTCATTGTTGTCCTTTGCTGAAGAAAAGCAGAAATCCAGCTG
Seq C2 exon
ATGCAGGGTAGCTGGAGTGCACATTGATGAGTCGCTGTTCCCTGCAGCCAACACTAACCAACACCTACCAAGCCTGCTTAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF127382=PTCB-BRCT=PD(53.7=90.0)
A:
NO
C2:
PF034059=FA_desaturase_2=PU(34.7=83.3)
Main Inclusion Isoform:
ENSBTAT00000031604fB4167
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCACCTGGGAAAAAGCA
R:
AAGCAGGCTTGGTAGGTGTTG
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development