BtaEX0021708 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4420485-4543658:+
Coord C1 exon
chr27:4420485-4420562
Coord A exon
chr27:4542020-4542269
Coord C2 exon
chr27:4543421-4543658
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTTTGCTGTGTCAGGCC
3' ss Score
7.19
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTACTGTGGTCTTTGGAAATGGGTCACTGGATTTCCGAGGAACCATTTGAACTGTCTAACTACTTCCCTGCAGCTCCT
Seq A exon
GCCTCACCTCCTACAGCAAGCTTTGACGACATGTGACTGCATCCAACTTGAGGGAGGTTCTGGATCCCCAGCTGCAGGGCTGCGTGGCCCCGTGACTTACTGCGTTTATGGGTCTTCGGCTTTCTCCTGCAGCTCAGCTCACAGTTAACCAAAGCAGATCTCTTCCGCGTCAGTATCTTCATGTGCAAAATTAAAGGAGCGCCCCACTTGCTCCCAGGGATGTTGGGAGTAACTGACGGCATGAACGAAG
Seq C2 exon
CTCTGCCGCCAGGAACGCCTGTCTTCCGCTGGGCAGTACCGTGGAACCCTGTTTGCCGACCAGCCCACCATGTTCATCTCCCCGGCCAGCAACCCCCCCAGAGCCAAGCTGGGGGAGCTGGTCGTGCTGTGCGGGGGTCGGGTCACACAGGTCCCTCGCCAGGCTAGCATCTTCATCGGACCCTCCCCAGGAAGGAAGAAGGAGACGGTCAAGTACCTGTCGGAAACGTGGATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX2-8/8=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.013
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(6.1=15.4)
A:
NO
C2:
PF0053321=BRCT=PU(95.6=81.2)
Main Inclusion Isoform:
ENSBTAT00000031604fB4169
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTCACTGGATTTCCGAG
R:
TCCACGTTTCCGACAGGTACT
Band lengths:
292-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development