BtaEX0021924 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50802898-50831617:+
Coord C1 exon
chr16:50802898-50803026
Coord A exon
chr16:50804555-50804602
Coord C2 exon
chr16:50804888-50831617
Length
48 bp
Sequences
Splice sites
3' ss Seq
GCGTGTTTGTCTGCCTGCAGGTG
3' ss Score
11.19
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTGCAGGAGGGGCTTCTTCGGGCCGGGCTGTGCCCTGCACTGCTCCTGTGGGGGTGGAGCCGACTGCGACCCTGTCAGCGGGCAGTGCCTCTGCGTGGACGGCTACACAGGGCCCACGTGCCGGCAGG
Seq A exon
GTGGACCCTCCCAGCTCCCGGAGAGCCCGTCTCCAGCCCTGGGCCCAG
Seq C2 exon
CGGCCCTACAACCAGGTTCCCACCAGACCCGGGCTCAGCAGCAGCCTAGAGAAGCACTAGCTCAGGGGCAGCCCCCACTGAGGCTTGGCTCCCAGGGGCCACTGAGGGGACCTGGGGGCTTTGGTGTCCACTGAGGAGGGACGTGTGGGGGCCAGGACTCCGGCCCCACCCTGGTCTCCGAGGCCTGTGGACAGTGGTGCAACCTTCCGCTCCGCAAGGATCTTCTGACCACGAGGATGGAGGCCCTGCCTGGCCCGCGCTGAGGATCATAGTGTGGAGGAAGCCCCACCTGCCATGCCCCCGGGGTGAGACTGCAGGCAGATGCGGGGGCAGGTGCGGGCATGGGGCCCTTCCTTGGAGCAAGTTCTTCTGGTGCTAGGCCTTGAACTGCTGCAGTTCAGTCTGTTTACCTGGAAACAGATGCTGGTGCTAGGCCGGGCCATATTTATGGAAGGTATTTATGGGCAGCCAGACCCTGGGCACTGGAGGGCTGCCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000027771fB4212
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCCTGTGGGGGTG
R:
CTTCTCTAGGCTGCTGCTGAG
Band lengths:
144-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development