BtaEX0022216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27689387-27692241:-
Coord C1 exon
chr16:27692173-27692241
Coord A exon
chr16:27689886-27689998
Coord C2 exon
chr16:27689387-27689444
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGCGACCCCATTGACTATAGCTC
3' ss Score
3.35
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCTCGACCCAGCGAGGTGGAGCAAGAAGATGGCCAGCTGAGGAGCCTGTTTGAGAAGTTTGCTGGGAAG
Seq A exon
CTCTCCAGGCTCCTCTGTCCATGGGATTTCCAAGGCAAGAATACTGGAGTGAGTTGCCTTTTCCAGGGGATCTTCCTGAGCCAGGGATTGAACCTGGGTCTCCTGCATTGCAG
Seq C2 exon
GATTCTGAGATCAGGGCCAATGAACTCAGGACAGCTCTGAATGAAGTGTTTTCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'19-23,'19-22,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000011676fB4263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACCCAGCGAGGTGG
R:
TGGAAAACACTTCATTCAGAGCTGT
Band lengths:
123-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development