BtaEX0022248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011789 | MGC157163
Description
Bos taurus RE1-silencing transcription factor (REST), mRNA. [Source:RefSeq mRNA;Acc:NM_001101880]
Coordinates
chr6:73838854-73847427:+
Coord C1 exon
chr6:73838854-73839146
Coord A exon
chr6:73840034-73840149
Coord C2 exon
chr6:73846524-73847427
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCCTGTTTCGCCGTCTTCAGTGG
3' ss Score
7.46
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
GTGTTGGAATGTGCGGCTCCCGAGAGCTCAGGGCGCAGGAGCGGAGTAAGCGCCGCCGAGGCCTGGGGCCCCAGAGCCCGCTGTGGGTGGCGGCGGCGGCCCGGACCGCAGGGCGAGAGCCAGCGGCCTGAACACTCTGTGCAGCCCCACTGGGTCTTCGCGGGCCTCGACGAGCCCAGCGTCCAACTTTTCCACCGTCACCCTCCCCTCCCCCGAAACTCCTGCAACAAAGAAAAGTAGTCCGTGAAGGAGCGGCGACGCGGGTCGTCGCCCCTCCTCGCCCAGAAAGGCCG
Seq A exon
TGGTGGGGAGCCCAGGAGACGCTTCAGGACGACTTGGTGTGTCGATGGTGCAGTGAGCGGGCCGAGGCGAGGGGAAGCGAGGGCGCCGGAATTTGCGAAGAGCTGCTTTGTGTTTG
Seq C2 exon
AGCACAGATATGGCCACCCAGGTAATGGGGCAGTCTTCCGGAGGAGGAGGGCTGTTCACCGGCAGTGGCACCATGGGCATGGCCTTGCCAAACGACATGTATGACTTGCCTGATCTCTCTCGAGCTGAACTGGCTGCGCCTCAGCTCATCATGTTGGCAAACGTGGCCTTAACTGGGGAGGTAAATGGCGGCTGCTGTGATTACCTGGTTGGCGAAGAAAGGCAGATGGCAGAATTGATGCCTGTTGGGGACAGCAACTTCTCAGATAGTGATGGAGAAGGACTTGAGGAGTCTCCTGAGGTGAAAGGCGAACCCAGTGGGCTGGAGAACATGGAACTGGAAAGTTTGGAACTCAGTGTTGTGCAGCCACGGCCTGTGTTTGAGGTAGCAGCTGCCTCAGAAACGTACAGCTCAAATAAAGACGTTCCTCAGGAAACACCCGTAGCAGAGGACAAGTGCAAGAACTTGAAGACCAAACCCTTCCGCTGTAAACCATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011789_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.344
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=PU(38.5=3.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAAACTCCTGCAACAAA
R:
AGTTAAGGCCACGTTTGCCAA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development