BtaEX0022531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23104909-23117190:+
Coord C1 exon
chr13:23104909-23105018
Coord A exon
chr13:23106702-23106748
Coord C2 exon
chr13:23117087-23117190
Length
47 bp
Sequences
Splice sites
3' ss Seq
AGATTATGTGTTTTTGGCAGGAA
3' ss Score
6.5
5' ss Seq
CAGGTGGTA
5' ss Score
0.39
Exon sequences
Seq C1 exon
GTTGGGCTCATGTGGTTTGTGCCCTGTATATACCAGAGGTACAGTTTGCCAATGTTTCTACAATGGAACCAATTGTTTTACAGTCTGTTCCACATGATCGTTATAATAAG
Seq A exon
GAATGTCACAGAGTTGATGCTGTGTTCTTCTCATTGCATCCTGTCAG
Seq C2 exon
ACTTGCTATATTTGTGATGAACAAGGAAGAGAAAGCAAAGCAGCCACTGGTGCTTGCATGACATGTAATAAACATGGATGTCGACAAGCTTTCCACGTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
A:
PF138321=zf-HC5HC2H_2=PD(14.9=62.5)
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
Main Inclusion Isoform:
ENSBTAT00000061645fB4342
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGGTACAGTTTGCCAA
R:
ACATGTCATGCAAGCACCAGT
Band lengths:
145-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development