BtaEX0023438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53540618-53543001:-
Coord C1 exon
chr1:53542876-53543001
Coord A exon
chr1:53541987-53542483
Coord C2 exon
chr1:53540618-53540788
Length
497 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTATTTTTTTACAGCCC
3' ss Score
9.92
5' ss Seq
TCAGTTAGG
5' ss Score
-5.96
Exon sequences
Seq C1 exon
AACACGAGTCTCCTCAGCCAGAAGAAGAAACTGGAGGTGGATGTAGCCAGGATGCAGAAGGAAGCTGAGGAGGCGATGCAGGGCTGTCAAAATGCAGAAGAGAAGGCCAAGAAGGCAGCCACTGAG
Seq A exon
CCCATACTGCTGCTTCAGTAACAGAATCGGGTCGGTGAGGAAGGCCTTCAGGATTGGTGCACCTTCCTTATCTGCAAGTTTAAAGTTGTTGATAGGTGTACTTTTCGTGAATGAGACCAAGCTCAGGGTTGACTGCCAGCCTTGACTGTACCTTTGTGGGCACTGAAAAGGGATAGACTCTGGACACCCACTGCAGATAGATGCAGATTTCTCTCAAAAGGCATGACAAACAGATGACAGTACTCAAAAAAAAAAGGCCATGGAAGGAGGGAGGTGGGAGAAAAGTCTGTGCGTCAAGGTCCCAGGCTTGCAGGTCCCAGCGCCTGCTGAGCAGAGCTTGGACTTGATCTCACCCTCCACTCACCACTTCCCCATGAGGTGCTCCTGCACAGTACGTCGGATGCACAAACACACGCAGCAGCCCAGAGCTCGCCCTGAGAATGAAAGCTGATCCTCTTGCTAAACAGTGTATGGGAACCGAAGAGACAAGATACTCA
Seq C2 exon
GTAGCAAACATGTCAGAAGCACTGAAGAAGGAGCAAGATACCAATGCCCACTTGGAGAGGATGAGAAAGAACATGGAGCAGACAATTAAAGACTTACAAGAAAGGCTGGATGATGCTGAGCAGACAGCCATAGTGGGGAACAGAAAGCAAATCCAGAAACTAGAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399-'42-48,'42-47,43-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.000 C2=0.912
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.3=100)
A:
PF0157614=Myosin_tail_1=PD(0.6=57.1)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(20.9=100)
Main Inclusion Isoform:
ENSBTAT00000032372fB4520
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTCTCCTCAGCCAGAAG
R:
CCTGGATTCTAGTTTCTGGATTTGC
Band lengths:
294-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development