BtaEX0023917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001764 | NCAN
Description
Bos taurus neurocan (NCAN), mRNA. [Source:RefSeq mRNA;Acc:NM_001193082]
Coordinates
chr7:3973560-3978183:-
Coord C1 exon
chr7:3978093-3978183
Coord A exon
chr7:3973823-3973947
Coord C2 exon
chr7:3973560-3973639
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCCCATCTGACCTGCAAAGAAA
3' ss Score
2.44
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGCGCAGGGGTGGACCCGGCGCGGATTGAGCCCAGCCGAGCGTCCTTTGTGCCGGTCGACCGCCCCGGGATGCGTTGGCGCTAGGAGCCAG
Seq A exon
AAACTGAGGCACAGAGAAGCTAAGCTATGTGCTCAAGGTCACACAGCAAGGAACAGGCAGAGAGACAACCCCGGTTTGATGCACTCATGCTCTGACCATCAGACTTCACTTGCTGGGGTTCTGAA
Seq C2 exon
GTCCAGGATGGGGGCCTTGTCTGTCTGGGTCTCAGGCCTCCTGACTCTCCAGATGCTTCTCTTTGTGGCTGGGGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001764_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTGAGCCCAGCCGA
R:
CTCCCCAGCCACAAAGAGAAG
Band lengths:
146-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development