BtaEX0024078 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105887221-105888362:-
Coord C1 exon
chr11:105888265-105888362
Coord A exon
chr11:105887856-105887942
Coord C2 exon
chr11:105887221-105887319
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTGTCAACCCATAACATAGGGC
3' ss Score
3.68
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
Exon sequences
Seq C1 exon
AGTTTCTGGAGGTTCATCTTCCGGAGGAGCCTGCCATCCACTGCCCTCCGTCAGATGGACTTTGCTGTGCTGGGTCTCGGGGACTCGTCTTACGCCAA
Seq A exon
GGCAACAAGGGAGCCCGGCTCAGCCCGCCTTCATAAGCAGCCTTTGGGGAGGGGTTCGAGCTTACGATGAGCACGGAGAACCGGGAG
Seq C2 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGCCGGCTGCTGCAGCTCGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCACGAACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.826 C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
PF0025820=Flavodoxin_1=PD(4.0=16.7)
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
ENSBTAT00000066145fB4633
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCCTGCCATCCACT
R:
CAGTTCGTGCTGGTCATCGC
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development