BtaEX0024485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007244 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr28:8781213-8783238:-
Coord C1 exon
chr28:8782987-8783238
Coord A exon
chr28:8781939-8782075
Coord C2 exon
chr28:8781213-8781413
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTCACATATCATGAAATAGCTG
3' ss Score
3.34
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTTCCCCGCAGCGAGTTAACGGCAAGGTGAAAGGGAGGATCTTTGTGGGGGACAGCCAGGTCCCCATTGTCTTTGAGAACACCGACCTCCATTCGTACGTGGTAATGAACCATGGGCGGTCCTACACAGCCATCAGCACCATTCCTGAGACTGTCGGGTACTCTCTGCTTCCTCTGGCCCCTATTGGAGGCATCATTGGATGGATGTTTGCAGTGGAGCAAGACGGATTCAAGAATGGCTTCAGCATCACAG
Seq A exon
CTGCCAGCCATGCTATCAGGGGAGACTTCATACGTGGAAAAGGGAGGAAGCTGGAAGAAGGTGGAATGTTTTTTTCCTGCTTGTTTGGGGCTGCTGCCCTGCATAGACCAAGGGGAGTTCCTGAGCCAGCACCCATG
Seq C2 exon
GGGGGGAGTTCACCCGCCAGGCTGAGGTGACCTTTGTGGGGCACCGGGACAAGCTGATCATTAAGCAGCAGTTCAGCGGCATTGATGAGCACGGACACCTGACCATTGACACGGAGCTGGAGGGCCGCGTGCCGCAGATCGCCTTTGGCTCCTCGGTGCACATCGAACCCTACACGGAGCTCTACCACTACTCACGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007244-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.152 C2=0.130
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(42.2=100)
A:
PF074747=G2F=PD(9.5=19.6)
C2:
PF074747=G2F=FE(33.7=100)
Main Inclusion Isoform:
ENSBTAT00000009531fB4708
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGTTTGCAGTGGAGCA
R:
CCTGCCGTGAGTAGTGGTAGA
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development