BtaEX0024744 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105703905-105705648:-
Coord C1 exon
chr11:105705605-105705648
Coord A exon
chr11:105705040-105705166
Coord C2 exon
chr11:105703905-105703944
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGAGGGCCCCTCCCCTCCAGGGC
3' ss Score
7.87
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCTCTGGACGTGCGTGGTGAAGCCAGGCCTCGGGCTGCTGCACG
Seq A exon
GGCCCGTGACACTGCCCCCGGCAGAGCTGACACCCCCTGCAGCCCCAGGACACCTACTGACACGGAGATGGAGGTCAGCTCCGGCCAGGCTAGGCAGCACGACCGTGGCACGCTGGTCACCCACAAG
Seq C2 exon
AGTGCCCACGGGGAACACGCTGGCCAGCAGCTTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACGTGCGTGGTGAAG
R:
CTGAAGGAAGCTGCTGGCC
Band lengths:
82-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development