BtaEX0024881 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000507 | NR4A1
Description
Bos taurus nuclear receptor subfamily 4, group A, member 1 (NR4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075911]
Coordinates
chr5:27982314-27992209:-
Coord C1 exon
chr5:27992103-27992209
Coord A exon
chr5:27983988-27984036
Coord C2 exon
chr5:27982314-27982801
Length
49 bp
Sequences
Splice sites
3' ss Seq
CAGCTTGCTTTCTTCCCCAGCCT
3' ss Score
6.5
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGCTCCTCAAGGCCACCAGGAAGAGGCCCCGACCAGCCCTGGGAGTCTCCCTTGGTGCAGCTGTCCAGGACCTCTGAGAATCAAAGCAGGTCGTGTGGAGGAAGCTG
Seq A exon
CCTCCCTCCCTGACTGATGAGGCTAGAGTCACGGAGACAAGGCAAGGAG
Seq C2 exon
AGATGCCCTGTATCCAAGCCCAGTATGGGACACCAGCACCAAGCCCAGGACCCCGTGACCACCTGGCAGGCGACCTCCTGACCCCTGAGCTCAGCAAGCCCACCATGGACCTGGCCAGCCCCGAGGCAGCCCCCGCTGTCCCTACCGCCTTGCCCAGCTTCAGCACCTTCATGGACGGCTACACAGGGGAGTTTGACACCTTCCTCTACCAACTGTCAGGCACAGCCCAGCCGTGCTCCTCTGCCTCCTCCTCGGCCTCCTCCACGTCCTCATCGTCAGCCACCTCCCCAGCCTCTGCTTCCTTCAAGTTCGAGGACTTCCAGGTGTACGGCTGCTACCCTGGCACGCTGAGTGGCCCTCTGGACGAGACCCTGTCCTCCAGCGGCTCTGACTACTATGGCAGTCCCTGCTCTGCACCGTCACCATCCACGCCCAGCTTCCAGCCTCCTCAGCTCTCTCCCTGGGATGGCTCCTTTGGCCCCTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000507_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGCCACCAGGAAGAGG
R:
CTTGGTGCTGGTGTCCCATAC
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development