BtaEX0025067 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007235 | NTNG2
Description
Bos taurus netrin G2 (NTNG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099025]
Coordinates
chr11:102345570-102353381:+
Coord C1 exon
chr11:102345570-102345596
Coord A exon
chr11:102353034-102353100
Coord C2 exon
chr11:102353214-102353381
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTTCTCATTCTGGTTCAAAGCTA
3' ss Score
4.45
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTGCCGCCGCAGGCTCCGCCGTCGGCA
Seq A exon
CTAGCAGGACCATCCCTCCCCAAATGGCACAGGAGTGTTGGAGGCCTGGGGCACTTTCCTGTGCCAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGTCTGGGCTACTACCGAAACGGCTCTGCAGAGCTGGACGACGAGAACGTGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007235_MULTIEX1-5/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
ENSBTAT00000009516fB4829
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development