BtaEX0025422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48282736-48326543:+
Coord C1 exon
chr2:48282736-48282818
Coord A exon
chr2:48309044-48309103
Coord C2 exon
chr2:48326470-48326543
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCTCTCTTTCTTTAGGAC
3' ss Score
13.03
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
CTGCAGGTGAAGCAGAGCAGAGAACGCTGCGAGAGGAACCTGTGAAGCGATTCCCACCGTCTCCGGAATCTCGCTCTGCCCTG
Seq A exon
GACTCCTGGGTTACTCGTAGTGACATGACATGCCGTGCTCACTTTAGGGATAAAGTGAAG
Seq C2 exon
GATTTCAGTTTGTGGAAATGAGCAGTCGTAAATCAAAGAGTAGCAACTTAATACAAGCAGACTACATTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291_MULTIEX1-2/14=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCAGAGCAGAGAACG
R:
TGTAGTCTGCTTGTATTAAGTTGCT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development