BtaEX0025477 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71295068-71394995:+
Coord C1 exon
chr4:71295068-71297024
Coord A exon
chr4:71363897-71363947
Coord C2 exon
chr4:71394756-71394995
Length
51 bp
Sequences
Splice sites
3' ss Seq
CAAACATTAATTTCTTACAGTTC
3' ss Score
6.74
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CTCCCTTGACTGCGTCATGGAATCGGTGCTCCTTCCAGGTGCACCGCCCCGCCTCTTTACCGTGGGCTACTCCTGATTGCTGGGAGTGTGGGTCACTCTGCCGTCTCTCCCGCCCTCCCCGCGTGGCCCCGCCCCAGGACCGGCGTAGCTCCTCCTCCTCGCTCCCGCGCCTCCCTCCCCTCTTGCTAATTGCCTGGCTGCGCGCGCGAAGTTCTGGGCAAAGTACTGGGAACTGGCTGAGCGTTCGCTGTACGCTGGAGCTGGGCGGAACGAGGCGAGCTGGGAGCCAGGAGGCCAGTGCGCAGCGCGGGCTCTGACCCCAGCGGCCGTCGGCGAGTAGCCATCCCCGCCGCTTTCTGCTGCAGCCGGGGCGGAAACTATCAGCTGTGCGTTGCTGGAGGACCGAAGAAGCCAGGTTTGCCTCCTTTCGCGTCTGCTGACAAACCCCGGAGCCCGGCACCGGGGAAACTAGGCGGCGTCCCCGGCGGCTGAGCGCGCAG
Seq A exon
TTCTAGAGGCTGGAAAGTCCGAGGACCCGGTACCTGCAGACCTGCTGTCTG
Seq C2 exon
GGATTTCTTCTAGGGCATCCAAAATGCTTTTAAAACATATTGGATAAAAGCTGAGCCACCTGCCTGTCTGGGACTTCCATACTCCCTGCTCCACTGTCTTCTGATGGCATTCTGACTACACTGAGGCCAAGTGACACGCTATTCAGGATGAGTGATGAGAAGAGCCTTGCGGTATCCCAAAAATTGGTCTCACCTTCAAGGAGCACAAGCAGCTGCTCTTCCAAGCAAGGAAGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGCGTCTGCTGACAAAC
R:
GGCAGGTGGCTCAGCTTTTAT
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development