BtaEX0025486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18631441-18693768:-
Coord C1 exon
chr2:18693623-18693768
Coord A exon
chr2:18658460-18658588
Coord C2 exon
chr2:18631441-18631523
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTAAGGTTTTTTTTTGCCAGGAA
3' ss Score
6.24
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
ACTGTGGGTGCCGGAGACCGAGGCTCCACGCAGGCGGCGCCCGCGCCTCGGCTCCCCGGCCGGCCCGCGCGCCCGTCCGCCGGGGCCGTCTCCCGCCTCCCGTCGCTGCCACCACACCATCGGCTGCACCGTTGCTCGTCTTCCCG
Seq A exon
GAATACAAAGCCCGAATCCATGTTCACCTTGAATCTTCACAATATTTTGGAGCAGATGTTTTTATCCTCGTATTATAGAATAGAAAATTGAAGTGCAGATGTTGAACAGTTTACCCAAAACCGAAAATA
Seq C2 exon
GGCTTCCCTGCTCTTCACACGCCCTGGATTGTAGCAGCAGCAGGAGCTGAGTTGGAAGTTGGTGTTTATTTCTCCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGGTGCCGGAGAC
R:
TGTGAGTGGAGAAATAAACACCA
Band lengths:
228-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development