BtaEX0025572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80566124-80567100:+
Coord C1 exon
chr5:80566124-80566259
Coord A exon
chr5:80566338-80566477
Coord C2 exon
chr5:80566956-80567100
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACATTTGTTATCTGTTTAAGGAA
3' ss Score
8.74
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GTCCAAAGGGCAGTAAAAGCACCCAGTCTCTTCAGAGTTCAAACCAAGAGCATGTGGCCACTTGTGAAGATGTTATTCTGACCAAACCAGCAGGGATCATACAATTCCCGAGAAATTTTCACAGAACCATTATGAG
Seq A exon
GAATTATTTCCCACCTGCTTTCCTGAAAGAATGGACTTTGAGACAATACCTGATTTGAAGTCTTAAGTATACAGAACCTGAATGTGAGATTACCCCTGCTGATAAACTGTACTTTCCCAACAAAAGAGATCACTTGTTAG
Seq C2 exon
CTGCCACTGGAGATTACTGGCCCCTATAAATCATATCATTCGCCTTGATATTATCAGCTTCCAGAAGCAACCAATGCCCTTGGCCTGTCAGGGTGACCTGTGGGTTTATGAAGGATTTGGATCAGGCAAAAAATTAATAGGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365-'45-50,'45-49,46-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000007060fB4938
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTAAAAGCACCCAGTCT
R:
TTGCCTGATCCAAATCCTTCA
Band lengths:
257-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development