BtaEX0025573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80507658-80509088:+
Coord C1 exon
chr5:80507658-80507721
Coord A exon
chr5:80508585-80508703
Coord C2 exon
chr5:80508991-80509088
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACATATGCTCTCCCACACAGGAC
3' ss Score
9.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTGCCCGGGGCTGTTTCACTCCTGCTGCTGCTGTTGCTGGCGGTCCACTCCCCGCCCAGCCGAG
Seq A exon
GACTGAAGTACGGAATTCATGCAGTTGATTTGAAAAGTATAGAAACTGTCTTGGAATCTAGGTTCTTCTCTAGAATTAGTAGTTGGAGAAATTCAACAGTTGGTGGACACCCATGGCAG
Seq C2 exon
GTCTCCCTGAAATTAGGTGGACACCACTTCTGTGGAGGAAGTTTGATTCAAGATGATCTGGTTGTTACAGCAGTACATTGCCTGATTGGCCTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(5.7=35.0)
C2:
PF0008921=Trypsin=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGTTTCACTCCTGCTG
R:
CCAATCAGGCAATGTACTGCTG
Band lengths:
146-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development