BtaEX0025680 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017125 | PABPC4
Description
Bos taurus poly(A) binding protein, cytoplasmic 4 (inducible form) (PABPC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001083724]
Coordinates
chr3:107093909-107094841:+
Coord C1 exon
chr3:107093909-107094028
Coord A exon
chr3:107094530-107094616
Coord C2 exon
chr3:107094711-107094841
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATTTGCTGGTCTGTTGTAGGGT
3' ss Score
8.25
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
Exon sequences
Seq C1 exon
GCTTCCAAGGAATGCCAAGTGCTATACGCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGCGGCCTCCCTACTACCGCTCAGAGAGTCG
Seq A exon
GGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCTGGAG
Seq C2 exon
GTGTTCCCACAGCTGTGCAGAACTTAGCGCCTCGTGCTGCTGTTGCTGCTGCTGCTGCTCCTCGGGCTGTTGCACCTTACAAATATGCCTCCAGCATCCGCAGTCCTCACCCGGCCATCCAGCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017125_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.967 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATACGCCAGTCTGGG
R:
GTAAGGTGCAACAGCCCGAG
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development