BtaEX0025827 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85120274-85121306:+
Coord C1 exon
chr10:85120274-85120382
Coord A exon
chr10:85120907-85120969
Coord C2 exon
chr10:85121140-85121306
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCTTCCTCCTTGCAGTAT
3' ss Score
10.77
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GGGAGCTGACTATCACAGGGCTGCCCTCCACAATGGAGGTGCCGGAAGGGGACACGGCCAGGCTGCTGTGTGTGGTGGCAGGAGAAAGCGTGAACATCCGATGGTCCAG
Seq A exon
TATGTCAGGACGACGCTAGGCACTGGGGATCCTGGTGTAATCTGAGCCCCCCCAACACTCCAG
Seq C2 exon
GAACGGGCTGCCGGTGCGGGCCGACGGCCACCGTGTGCACCAGTCCCCGGACGGCACGCTGCTGATCCACAACCTGCGGGCCAGGGACGAGGGCTCCTACACGTGCAGCGCCTACCGTGGAAGCCAGGCCGTCAGCCGCAGCACTGAGGTGAAGGTGGTCCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680-'33-36,'33-35,34-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(39.1=91.9)
A:
NO
C2:
PF0767911=I-set=PD(59.8=91.2)
Main Inclusion Isoform:
ENSBTAT00000015505fB4989
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAACATCCGATGGTCCAG
R:
GTAGGCGCTGCACGTGTAG
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development