BtaEX0026312 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19214397-19247733:+
Coord C1 exon
chr2:19214397-19214480
Coord A exon
chr2:19227785-19227897
Coord C2 exon
chr2:19247492-19247733
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGCTGTTTTTTTGAGGGG
3' ss Score
-0.88
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTATTTTTGATCGGAACCGGAAGGATGAGCTGCCTCGGTTGCAACTGGAGTGGATTGATAGCATCTGTATGCCTTTGTATCAG
Seq A exon
GGGAGGGTGTGTGTCACAATTCGATCCATCGTAAAGAGACTGAAGCTTGAGCCTGGAAACAAGGAGAAGTTGGAAATGGGGTTCCTGGAGTCTCCTACTCTCCACACAGCCAG
Seq C2 exon
GCATTGGTGAAGGTCAATGTGAAACTGAAGCCAATGTTGGATTCCGTGGCCACCAACAGAAGTAAGTGGGAAGAGTTGCACCAGAAAAGGCTGCTCGTCTCCGCAGCTGCCTCCGCCCCCTCCGCCAACGTCATGGAGACCAGGGATGACAGAAACTAACCCTTCAGGCCAGCTGCTGCTGCAAGATGACTGCGCCCTGGAGAACCGGCTTCGGTCCCGCACACCATTCTTTTGTTCCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'23-22,'23-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.2=100)
A:
PF0023314=PDEase_I=PD(7.1=44.7)
C2:
PF0023314=PDEase_I=PD(7.9=35.8)
Main Inclusion Isoform:
ENSBTAT00000021805fB5086
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGCAACTGGAGTGGATT
R:
CCAGGGCGCAGTCATCTTG
Band lengths:
248-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development