BtaEX0027103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92028788-92114430:-
Coord C1 exon
chr5:92114336-92114430
Coord A exon
chr5:92044190-92044370
Coord C2 exon
chr5:92028788-92028968
Length
181 bp
Sequences
Splice sites
3' ss Seq
AAAATCTGCCTTCATTACAGGAG
3' ss Score
6.83
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGTCAAGTTTGAATGGAACCTTGAGAGTCCTCTGGTGCAACTTCTGTTACACCGCTCACTACAAAGTGTCCAGATTGCCCATCGTCTTTACTG
Seq A exon
GAGACCTGCGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGTATGGCAACCCACTCTAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGATCCTGGTGGGCTGAAGTTCAGGGGGTTGCAAAGAGTCAGACACAACTGATTGACTATCACTTCTTGATTTCTTCACCCTCAAG
Seq C2 exon
GCTGCTAAAGGATGCACAGAATGAAGCTTATTTTAAAATCTGGTATCAGAAGCTATTGGCTGCACTCCAATTCTGTGCAGGAAAAGCCTTGAGGGATGAGTTTTCCAAGGAGCAGAAACTTATCAAGATTCTGGGAGACATTGGGGAAAAAGTCAAGACTGCTAGTGACCCTCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(2.0=7.9)
C2:
PF0061315=PI3Ka=PD(18.0=54.1)
Main Inclusion Isoform:
ENSBTAT00000043102fB5238
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTCCTCTGGTGCAACT
R:
AGGGTCACTAGCAGTCTTGACT
Band lengths:
244-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development