BtaEX0027203 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007946 | PIPOX
Description
Bos taurus pipecolic acid oxidase (PIPOX), mRNA. [Source:RefSeq mRNA;Acc:NM_001014878]
Coordinates
chr19:20974439-20975326:+
Coord C1 exon
chr19:20974439-20974621
Coord A exon
chr19:20974836-20974889
Coord C2 exon
chr19:20975174-20975326
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAGGCCTTGGGACTTCCCAGGTG
3' ss Score
2.78
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GATGCAATTCGACAGCTAGGTGGCATAGTGCATGATGGAGAGAAGGTAGTGGAGATAAAATCAGGGCTACCAGTCATGGTGAAAACTACCTCCAGGAGCTACCAAGCCAAGAGCTTGATCATCACGGCAGGTCCTTGGACCAACCGGCTCCTCCGTCCCTTGGGAGCTGAGCTACCTCTCCAG
Seq A exon
GTGGTGCAGTGGTAAAGAATCAGCCTACCAATGCAGAAGACTCAGGAGATGCAG
Seq C2 exon
ACCCTGCGGATCAACGTGTGTTACTGGCAAGAGAAGGTTCCTGGAAGCTACAGTGTGTCCCAGGCCTTTCCGTGTTTCATGGGCCTGGGCCTCAGCCTGGCTCCTCACCACATCTACGGGCTGCCCTCCAGAGAGTACCCAGGGCTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007946_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(16.8=100)
A:
PF0126619=DAO=PD(1.4=60.0)
C2:
PF0126619=DAO=FE(14.0=100)
Main Inclusion Isoform:
ENSBTAT00000010444fB5259
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCAGGAGCTACCAAGC
R:
TCCAGGAACCTTCTCTTGCCA
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development