BtaEX0027962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101652750-101653487:+
Coord C1 exon
chr11:101652750-101652800
Coord A exon
chr11:101653137-101653245
Coord C2 exon
chr11:101653341-101653487
Length
109 bp
Sequences
Splice sites
3' ss Seq
TAAGCGTTAACTCATTTCAGAGT
3' ss Score
3.73
5' ss Seq
GTGGTCCGT
5' ss Score
0.83
Exon sequences
Seq C1 exon
GTTATTTAGGAGGATTCGATGGTAACTTTCTGTGGAACAGAATTGGAGCAG
Seq A exon
AGTCCTCAGCATCATCCCGTACTTACTGAGAACCGGCCCTTGACCACATGAAGCCGTGGCCCACACACTCGGTCCCTGACGAGACCCAGCCTTGCAGACTCGCGCTGTG
Seq C2 exon
AATACAGCAGCAATGTGCCCGTGTGGTCCCTGCGCCTGCTGCCGGCCCTTTCGGGGGCCCTGTCGGTGCCCATGGCCTATGAGATCGTGTGGGAGCTCGGCTTCTCTCACTGTGCCGCCACGGGGGCTGCTCTGCTGCTGTTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(20.5=100)
A:
PF0236613=PMT=PD(9.6=80.0)
C2:
PF0236613=PMT=FE(19.8=100)
Main Inclusion Isoform:
ENSBTAT00000014315fB5383
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGGAGGATTCGATGGTAACTT
R:
CAATCAACAGCAGCAGAGCAG
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development