BtaEX0027963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101656574-101660277:+
Coord C1 exon
chr11:101656574-101656669
Coord A exon
chr11:101659686-101660085
Coord C2 exon
chr11:101660185-101660277
Length
400 bp
Sequences
Splice sites
3' ss Seq
AGATGTCCTTTTCATTTTAGGGG
3' ss Score
8.58
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
ATATGAGAACGGCCGTGGCAGCTCCCACCAGCAGCAGGTGACCTGCTACCCCTTCAAGGATGTCAACAACTGGTGGATTGTCAAGGACCCCGGGAG
Seq A exon
GGGACTGGAATGCAAAAGTCAAGAAACACCTGGAGTAATGGGCAAATTTGGCCTTGGAGTACAGAATGAAGCAGGGCGAAGGCTAGTAGTTTTGCCAAGAGAATGCACTGGTCACACCCTCTTCCAACAACACAAGAGAAGACTTCACATGGACATCACCAGATGGCCAACACCGAAATAAGATTGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTAAACAATAAGCAAAAACAAGACCTGGAGCTGACTGTGGCTCTCAGATCATGAGCTTCTTATTGACAAATTCAGATTTAAATTGAAGTACAGCACAGCTGCGGTCAATGTGATGATGATGAAGGGGGCCACACCAGGAAGCGTGGAAAGTGACCTGAAGTTTCAGAAAAGAGTTAAATGT
Seq C2 exon
GCACCAGCTGGTGGTGAACAACCCCCCGAGGCCCGTGCGGCACGGCGACGTTGTGCAACTGGTGCACGGCATGACCACCCGCCTCCTCAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.250
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=PD(0.1=0.0)
C2:
PF0281514=MIR=FE(17.6=100)
Main Inclusion Isoform:
ENSBTAT00000014315fB5384
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAGAACGGCCGTGGCAG
R:
GAGGAGGCGGGTGGTCAT
Band lengths:
184-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development