BtaEX0028784 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021691 | PSMD14
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 (PSMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001076067]
Coordinates
chr2:35121838-35175788:-
Coord C1 exon
chr2:35175737-35175788
Coord A exon
chr2:35145644-35145681
Coord C2 exon
chr2:35121838-35121909
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTTTTTTTTTCAGATA
3' ss Score
11.86
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAG
Seq A exon
ATAAAACTGAGGCATGAAGAAATGTAAAAAGCAAAGTG
Seq C2 exon
GGGCCACCTACAGATGCTCCTGCAGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGGCACTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021691_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.375 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Inclusion Isoform:
ENSBTAT00000046166fB5558
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCTTAGACTTGGAGGAGGT
R:
TTAACAGTGCCAGGGAAGAGA
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development