BtaEX0029282 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103759320-103760849:-
Coord C1 exon
chr11:103760749-103760849
Coord A exon
chr11:103760539-103760630
Coord C2 exon
chr11:103759320-103759368
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCACCCCGTTGGATTGCAGGGT
3' ss Score
5.97
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
ACTGGGCGGCTGCCATCCGCGTCGCCGCCCTGGACTGTGCGGAGGAGAAGAACCAGGAGGTGTGCCGCGCCTACGACATCCACTTCTACCCCACCTTCCGG
Seq A exon
GGTCACACTGGGACTGTGCACTTGCCTGCTCACACCCAGCGAGGCCTGCAGGCACGGGAGTGGCCGGCGCTGCCCTGAGAGCGCGTGCCCAA
Seq C2 exon
TATTTTAAAGCGTTTACAAAGGACTTCACAACTGGAGAAAACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.059
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.7=100)
A:
PF0008515=Thioredoxin=PD(12.6=46.2)
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Inclusion Isoform:
ENSBTAT00000042859fB5670
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGACTGTGCGGAGG
R:
AAAGTTTTCTCCAGTTGTGAAGTCCT
Band lengths:
119-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development