BtaEX0029447 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027809 | RABGAP1L
Description
Bos taurus RAB GTPase activating protein 1-like (RABGAP1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001103263]
Coordinates
chr16:57034588-57041945:+
Coord C1 exon
chr16:57034588-57034762
Coord A exon
chr16:57036211-57036418
Coord C2 exon
chr16:57041788-57041945
Length
208 bp
Sequences
Splice sites
3' ss Seq
TCCTTACAACTCCACTACAGAGG
3' ss Score
3.9
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
AATCATAGACCAATCCAACAATATGGAGATAGCATCTTTTCCAATTTATAAGGTATTGTTCTGTGCACGTGGCCATGATGGGACAACAGAGAGCAATTGCTTTGCGTTTACAGAGAGTTCCCATGGTTCTGAAGAATTCCAGATACATGTCTTCTCCTGTGAAATTAAAGAAGCA
Seq A exon
AGGTGGGGAAGCAGATGGTAGAATCCTGGCATTTCATGTTGGCAACCATCATTTAACATGCCTCTGTGGATTCTGGATAATTGGCACTCAACAATTAAAAAAATGAACTTTGAAGAATTGGAGAACCTGCTTCTTGGAGAGGCAGAAACACTGCTGTGGAAAGAAATTGAAAGGCACCTGGTTGCAAGCATTTTTCATAACTGTGATG
Seq C2 exon
GTAAGCAGAATTTTATATAGTTTCTGTACAGCTTTCAAACGTTCTTCTAGACAAGTATCTGATGTTAAAGACTCGGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGAAGATGATGGAAAAGGAAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027809_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(53.7=100)
A:
PF0064018=PID=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATAGACCAATCCAACAATATGG
R:
CCTCCAAGGAGACACTGAAGG
Band lengths:
302-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development